Guilherme Borges Dias
Bioinformatician at Department of Cell and Molecular Biology; NBIS - National Bioinformatics Infrastructure Sweden
- E-mail:
- guilherme.borges.dias@icm.uu.se
- Visiting address:
- Husargatan 3
75237 Uppsala - Postal address:
- Box 596
75124 Uppsala
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Short presentation
Bioinformatician with experience in eukaryotic genome assembly and gene annotation, structural variation and repetitive DNAs. Currently working on projects within the umbrella of the European Reference Genome Atlas.
Publications
Selection of publications
- A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne) (2024)
- Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines. (2022)
- Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. (2022)
- Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. (2021)
- An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini. (2018)
Recent publications
- A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne) (2024)
- Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera (2023)
- Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines. (2022)
- Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. (2022)
- Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878). (2021)
All publications
Articles
- A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne) (2024)
- Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera (2023)
- Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines. (2022)
- Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. (2022)
- Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878). (2021)
- Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. (2021)
- Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. (2021)
- Structure, Organization, and Evolution of Satellite DNAs (2021)
- First Description of a Satellite DNA in Manatees' Centromeric Regions. (2021)
- Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered. (2020)
- Characterization of Satellite DNAs in Squirrel Monkeys genus Saimiri (Cebidae, Platyrrhini). (2020)
- Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees. (2019)
- De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines. (2019)
- Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies. (2018)
- An eutherian intronic sequence gave rise to a major satellite DNA in Platyrrhini. (2018)
- Identification and characterization of a subtelomeric satellite DNA in Callitrichini monkeys. (2017)
- A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis. (2017)
- High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis. (2017)
- The complete mitochondrial genomes of two Atlantic spiny rats, genus Trinomys (Rodentia: Echimyidae), from low-pass shotgun sequencing (2016)
- Helitrons in Drosophila (2016)
- Helitrons shaping the genomic architecture of Drosophila (2015)
- Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis. (2014)
- Genomics of ecological adaptation in cactophilic Drosophila. (2014)
