Infection Medicine

A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process

Verweij, Stefan; Haverhoek, Vincent; Bergman, Erik; Westman, Gabriel et al.

Part of Clinical Pharmacology and Therapeutics, p. 871-880, 2024

• DOI for A Natural Language Processing Approach towards Harmonized Communication of Uncertainties Identified during the European Medicine Authorization Process
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Antibiotic-induced microbiome disturbances in hematological patients undergoing hematopoietic stem cell transplantation: a prospective observational study

Montelin, Hanna; Hugerth, Luisa; Debelius, Justine; Melhus, Åsa et al.

2024

Impact of ceftibuten, ciprofloxacin, nitrofurantoin, pivmecillinam and trimethoprim-sulphamethoxazole on the intestinal microbiota and resistome: a randomized controlled trial with healthy adults

Montelin, Hanna; Debelius, Justine; Sewunet, Tsegaye; Nääs, Anja et al.

2024

Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study

Krifors, Anders; Blennow, Ola; Påhlman, Lisa I; Gille-Johnson, Patrik et al.

Part of Infectious Diseases, p. 110-115, 2024

• DOI for Influenza-associated invasive aspergillosis in patients admitted to the intensive care unit in Sweden: a prospective multicentre cohort study
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Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae

Örmälä-Tiznado, Anni-Maria; Allander, Lisa; Maatallah, Makaoui; Kabir, Muhammad Humaun et al.

Part of Microbiology Spectrum, p. 1-14, 2024

• DOI for Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae
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Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing

Dong, Guojun; Bate, Andrew; Haguinet, François; Westman, Gabriel et al.

Part of Drug Safety, p. 173-182, 2024

• DOI for Optimizing Signal Management in a Vaccine Adverse Event Reporting System: A Proof-of-Concept with COVID-19 Vaccines Using Signs, Symptoms, and Natural Language Processing
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Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study

Causevic, Sara; Ekström, Anna Mia; Orsini, Nicola; Kagesten, Anna et al.

Part of Global Health Action, 2024

• DOI for Prevalence and associated factors for poor mental health among young migrants in Sweden: a cross-sectional study
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Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model

Zhao, Chenyan; Kristoffersson, Anders N.; Khan, David D.; Lagerbäck, Pernilla et al.

Part of Scientific Reports, 2024

• DOI for Quantifying combined effects of colistin and ciprofloxacin against Escherichia coli in an in silico pharmacokinetic-pharmacodynamic model
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Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

Hong, Lisa T.; Downes, Kevin J.; Fakhriravari, Alireza; Abdul-Mutakabbir, Jacinda C. et al.

Part of Pharmacotherapy, p. 208-209, 2024

• DOI for Response to comment on 'International consensus recommendations for the use of prolonged-infusion β-lactams endorsed by the American College of Clinical Pharmacy (ACCP), the British Society for Antimicrobial Chemotherapy (BSAC), the Cystic Fibrosis Foundation (CFF), the European Society of Clinical Microbiology and Infectious Diseases (ESCMID), the Infectious Diseases Society of American (IDSA), the Society of Critical Care Medicine (SCCM), and the Society of Infectious Diseases Pharmacists'

The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients

Lorant, Camilla; Zigmantaviciute, Justina; Ali, Naima; Bonnevier, Ursa et al.

Part of BMC Infectious Diseases, 2024

• DOI for The risk factors associated with post-transplantation BKPyV nephropathy and BKPyV DNAemia: a prospective study in kidney transplant recipients
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Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium

Stankowska, Wiktoria; Sarkisyan, Daniil; Bruhn-Olszewska, Bozena; Duzowska, Katarzyna et al.

Part of Cancers, 2024

• DOI for Tumor Predisposing Post-Zygotic Chromosomal Alterations in Bladder Cancer-Insights from Histologically Normal Urothelium
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Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach

Nohrborg, Sandra; Nguyen-Thi, Thinh; Xuan, Huyen Nguyen; Lindahl, Johanna et al.

Part of Frontiers in Veterinary Science, 2024

• DOI for Understanding Vietnamese chicken farmers' knowledge and practices related to antimicrobial resistance using an item response theory approach
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Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting

Rystedt, Einar; Moren, Jakob; Lindbäck, Johan; Tedim Cruz, Vitor et al.

Part of PLOS ONE, 2024

• DOI for Validation of a web-based self-administered test for cognitive assessment in a Swedish geriatric setting
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A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks

Naguib, Mahmoud; Eriksson, Per; Jax, Elinor; Wille, Michelle et al.

Part of Microbiology Spectrum, 2023

• DOI for A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks
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A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model

Bergman, Erik; Pasmooij, Anna Maria Gerdina; Mol, Peter G. M.; Westman, Gabriel

Part of PLOS ONE, 2023

• DOI for A full-document analysis of the semantic relation between European Public Assessment Reports and EMA guidelines using a BERT language model
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A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome

Hedin, Wilhelm; Fröberg, Gabrielle; Fredman, Kalle; Chryssanthou, Erja et al.

Part of Journal of Infectious Diseases, p. 820-827, 2023

• DOI for A Rough Colony Morphology of Mycobacterium abscessus Is Associated With Cavitary Pulmonary Disease and Poor Clinical Outcome
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Absenteeism Costs Due to COVID-19 and Their Predictors in Non-Hospitalized Patients in Sweden: A Poisson Regression Analysis

Kisiel, Marta; Lee, Seika; Janols, Helena; Faramarzi, Ahmad

Part of International Journal of Environmental Research and Public Health, 2023

• DOI for Absenteeism Costs Due to COVID-19 and Their Predictors in Non-Hospitalized Patients in Sweden: A Poisson Regression Analysis
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Activity of polymyxin B combinations against genetically well-characterised Klebsiella pneumoniae producing NDM-1 and OXA-48-like carbapenemases

Olsson, Anna; Allander, Lisa; Shams, Ayda; Al-Farsi, Hissa et al.

Part of International Journal of Antimicrobial Agents, 2023

• DOI for Activity of polymyxin B combinations against genetically well-characterised Klebsiella pneumoniae producing NDM-1 and OXA-48-like carbapenemases
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Age-specific and sex-specific risks for HCC in African-born persons with chronic hepatitis B without cirrhosis

Kamal, Habiba; Ingre, Michael; Stål, Per; Westman, Gabriel et al.

Part of Hepatology Communications, 2023

• DOI for Age-specific and sex-specific risks for HCC in African-born persons with chronic hepatitis B without cirrhosis
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Agreement between reported questionnaire data and medical records on diagnosis and COVID-19 symptoms at onset

Kisiel, Marta A.; Kock, Claes; Sultan, Josef; Janols, Helena et al.

Part of European Clinical Respiratory Journal, 2023

• DOI for Agreement between reported questionnaire data and medical records on diagnosis and COVID-19 symptoms at onset
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An experimental porcine model of invasive candidiasis

Krifors, Anders; Lignell, Anders; Lipcsey, Miklós; Sjölin, Jan et al.

Part of Intensive Care Medicine Experimental, 2023

• DOI for An experimental porcine model of invasive candidiasis
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An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans

Skog, Erik; Nykvist, Marie; Naguib, Mahmoud M.; Wille, Michelle et al.

Part of Journal of General Virology, 2023

• DOI for An oseltamivir-resistant avian H1N1 influenza A virus can transmit from mallards to chickens similarly to a wild-type strain: implications for the risk of resistance transmission to humans
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Anakinra or tocilizumab in patients admitted to hospital with severe covid-19 at high risk of deterioration (IMMCoVA): A randomized, controlled, open-label trial

Sundén-Cullberg, Jonas; Chen, Puran; Häbel, Henrike; Skorup, Paul et al.

Part of PLOS ONE, 2023

• DOI for Anakinra or tocilizumab in patients admitted to hospital with severe covid-19 at high risk of deterioration (IMMCoVA): A randomized, controlled, open-label trial
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Antibiotic use during coronavirus disease 2019 intensive care unit shape multidrug resistance bacteriuria: A Swedish longitudinal prospective study

Karlsson, Philip A.; Pärssinen, Julia; Danielsson, Erik A.; Fatsis-Kavalopoulos, Nikos et al.

Part of Frontiers in Medicine, 2023

• DOI for Antibiotic use during coronavirus disease 2019 intensive care unit shape multidrug resistance bacteriuria: A Swedish longitudinal prospective study
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Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases

Wasberg, Anishia; Rodrigues Faria, Ines; Bergholm, Julia; Petric, Philipp P. et al.

Part of Scientific Reports, 2023

• DOI for Assessing compatibility and viral fitness between poultry-adapted H9N2 and wild bird-derived neuraminidases
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Candidatus Rickettsia Vini DNA in Ticks Collected from Nest Burrows of the European Sand Martin (Riparia riparia) in Sweden

Wilhelmsson, Peter; Lindgren, Per-Eric; Fransson, Thord; Grandi, Giulio et al.

Part of Vector Borne and Zoonotic Diseases, p. 378-383, 2023

• DOI for Candidatus Rickettsia Vini DNA in Ticks Collected from Nest Burrows of the European Sand Martin (Riparia riparia) in Sweden

Clustering Analysis Identified Three Long COVID Phenotypes and Their Association with General Health Status and Working Ability

Kisiel, Marta A.; Lee, Seika; Malmquist, Sara; Rykatkin, Oliver et al.

Part of Journal of Clinical Medicine, 2023

• DOI for Clustering Analysis Identified Three Long COVID Phenotypes and Their Association with General Health Status and Working Ability
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Combination therapy of tyrosine kinase inhibitor sorafenib with the HSP90 inhibitor onalespib as a novel treatment regimen for thyroid cancer

Lundgren Mortensen, Anja Charlotte; Berglund, Hanna; Hariri, Mehran; Papalanis, Eleftherios et al.

Part of Scientific Reports, 2023

• DOI for Combination therapy of tyrosine kinase inhibitor sorafenib with the HSP90 inhibitor onalespib as a novel treatment regimen for thyroid cancer
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Early decreased respiratory chain capacity in resuscitated experimental sepsis is a major contributor to lactate production

von Seth, Magnus; Hillered, Lars; Otterbeck, Alexander; Hanslin, Katja et al.

Part of Shock, p. 461-468, 2023

• DOI for Early decreased respiratory chain capacity in resuscitated experimental sepsis is a major contributor to lactate production

Early Staphylococcal Periprosthetic Joint Infection (PJI) Treated with Debridement, Antibiotics, and Implant Retention (DAIR): Inferior Outcomes in Patients with Staphylococci Resistant to Rifampicin

Eriksson, Hannah K.; Lazarinis, Stergios; Järhult, Josef D.; Hailer, Nils

Part of Antibiotics, 2023

• DOI for Early Staphylococcal Periprosthetic Joint Infection (PJI) Treated with Debridement, Antibiotics, and Implant Retention (DAIR): Inferior Outcomes in Patients with Staphylococci Resistant to Rifampicin
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Enhanced bacterial clearance in early secondary sepsis in a porcine intensive care model.

Wilske, Frida; Skorup, Paul; Hanslin, Katja; Janols, Helena et al.

Part of Scientific Reports, 2023

• DOI for Enhanced bacterial clearance in early secondary sepsis in a porcine intensive care model.
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Exploring the epidemiology of mcr genes, genetic context and plasmids in Enterobacteriaceae originating from pigs and humans on farms in Thailand

Leangapichart, Thongpan; Stosic, Milan S; Hickman, Rachel A.; Lunha, Kamonwan et al.

Part of Journal of Antimicrobial Chemotherapy, p. 1395-1405, 2023

• DOI for Exploring the epidemiology of mcr genes, genetic context and plasmids in Enterobacteriaceae originating from pigs and humans on farms in Thailand
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Fluid restrictive resuscitation with high molecular weight hyaluronan infusion in early peritonitis sepsis

Barrueta Tenhunen, Annelie; van der Heijden, Jaap; Skorup, Paul; Maccarana, Marco et al.

Part of Intensive Care Medicine Experimental, 2023

• DOI for Fluid restrictive resuscitation with high molecular weight hyaluronan infusion in early peritonitis sepsis
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HDV RNA Assays: Performance characteristics, clinical utility and challenges

Wedemeyer, Heiner; Leus, Mitchell; Battersby, Thomas R.; Glenn, Jeffrey et al.

Part of Hepatology, 2023

• DOI for HDV RNA Assays: Performance characteristics, clinical utility and challenges
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Heparin-binding protein as a marker of ventriculostomy related infection and central nervous system inflammation in neuro-intensive care

Wedin, Johan O; Cederberg, David; Linder, Adam; Westman, Gabriel

Part of Clinical neurology and neurosurgery, 2023

• DOI for Heparin-binding protein as a marker of ventriculostomy related infection and central nervous system inflammation in neuro-intensive care
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High molecular weight hyaluronan: a potential adjuvant to fluid resuscitation in abdominal sepsis?

Barrueta Tenhunen, Annelie; van der Heijden, Jaap; Dogné, Sophie; Flamion, Bruno et al.

Part of Shock, p. 763-770, 2023

• DOI for High molecular weight hyaluronan: a potential adjuvant to fluid resuscitation in abdominal sepsis?
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Immunogenicity and Cross-Protective Efficacy Induced by an Inactivated Recombinant Avian Influenza A/H5N1 (Clade 2.3.4.4b) Vaccine against Co-Circulating Influenza A/H5Nx Viruses

Mahmoud, Sara H.; Khalil, Ahmed A.; Abo Shama, Noura M.; El Sayed, Marwa F. et al.

Part of Vaccines, 2023

• DOI for Immunogenicity and Cross-Protective Efficacy Induced by an Inactivated Recombinant Avian Influenza A/H5N1 (Clade 2.3.4.4b) Vaccine against Co-Circulating Influenza A/H5Nx Viruses
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Incidence of Rifampicin Resistance in Periprosthetic Joint Infection: A Single-Centre Cohort Study on 238 Patients

Lazarinis, Stergios; Hailer, Nils; Järhult, Josef D.; Brüggemann, Anders

Part of Antibiotics, 2023

• DOI for Incidence of Rifampicin Resistance in Periprosthetic Joint Infection: A Single-Centre Cohort Study on 238 Patients
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Infectious SARS-CoV-2 is rarely present in the nasopharynx samples collected from Swedish hospitalized critically ill COVID-19 patients

Ling, Jiaxin; Hickman, Rachel A.; Frithiof, Robert; Hultström, Michael et al.

Part of Irish Journal of Medical Science, p. 227-229, 2023

• DOI for Infectious SARS-CoV-2 is rarely present in the nasopharynx samples collected from Swedish hospitalized critically ill COVID-19 patients
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Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics

Almazan, Nerea Martin; Rahbar, Afsar; Carlsson, Marcus; Hoffman, Tove et al.

Part of iScience, 2023

• DOI for Influenza-A mediated pre-existing immunity levels to SARS-CoV-2 could predict early COVID-19 outbreak dynamics

International consensus recommendations for the use of prolonged-infusion beta-lactam antibiotics: Endorsed by the American College of Clinical Pharmacy, British Society for Antimicrobial Chemotherapy, Cystic Fibrosis Foundation, European Society of Clinical Microbiology and Infectious Diseases, Infectious Diseases Society of America, Society of Critical Care Medicine, and Society of Infectious Diseases Pharmacists

Hong, Lisa T; Downes, Kevin J; FakhriRavari, Alireza; Abdul-Mutakabbir, Jacinda C et al.

Part of Pharmacotherapy, p. 736-739, 2023

• DOI for International consensus recommendations for the use of prolonged-infusion beta-lactam antibiotics: Endorsed by the American College of Clinical Pharmacy, British Society for Antimicrobial Chemotherapy, Cystic Fibrosis Foundation, European Society of Clinical Microbiology and Infectious Diseases, Infectious Diseases Society of America, Society of Critical Care Medicine, and Society of Infectious Diseases Pharmacists
• Download full text (pdf) of International consensus recommendations for the use of prolonged-infusion beta-lactam antibiotics: Endorsed by the American College of Clinical Pharmacy, British Society for Antimicrobial Chemotherapy, Cystic Fibrosis Foundation, European Society of Clinical Microbiology and Infectious Diseases, Infectious Diseases Society of America, Society of Critical Care Medicine, and Society of Infectious Diseases Pharmacists

International consensus recommendations for the use of prolonged-infusion beta-lactam antibiotics: Endorsed by the American College of Clinical Pharmacy, British Society for Antimicrobial Chemotherapy, Cystic Fibrosis Foundation, European Society of Clinical Microbiology and Infectious Diseases, Infectious Diseases Society of America, Society of Critical Care Medicine, and Society of Infectious Diseases Pharmacists

Hong, Lisa T.; Downes, Kevin J.; Fakhriravari, Alireza; Abdul-Mutakabbir, Jacinda C. et al.

Part of Pharmacotherapy, p. 740-777, 2023

• DOI for International consensus recommendations for the use of prolonged-infusion beta-lactam antibiotics: Endorsed by the American College of Clinical Pharmacy, British Society for Antimicrobial Chemotherapy, Cystic Fibrosis Foundation, European Society of Clinical Microbiology and Infectious Diseases, Infectious Diseases Society of America, Society of Critical Care Medicine, and Society of Infectious Diseases Pharmacists
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Invasive fungal infection by Peziza ostracoderma in an immunocompromised patient

Kinch, Amelie; Furebring, Mia; Chryssanthou, Erja; Hallböök, Helene

Part of Medical Mycology Case Reports, p. 26-30, 2023

• DOI for Invasive fungal infection by Peziza ostracoderma in an immunocompromised patient
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In Vivo Visualization and Quantification of Neutrophil Elastase in Lungs of COVID-19 Patients: A First-in-Humans PET Study with ¹¹C-NES

Antoni, Gunnar; Lubberink, Mark; Sörensen, Jens; Lindström, Elin et al.

Part of Journal of Nuclear Medicine, p. 145-148, 2023

• DOI for In Vivo Visualization and Quantification of Neutrophil Elastase in Lungs of COVID-19 Patients: A First-in-Humans PET Study with ¹¹C-NES
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Knowledge of the abortion law and key legal issues of sexual and reproductive health and rights among recently arrived migrants in Sweden: a cross-sectional survey

Tirado, Veronika; Ekström, Anna Mia; Orsini, Nicola; Hanson, Claudia et al.

Part of BMC Public Health, 2023

• DOI for Knowledge of the abortion law and key legal issues of sexual and reproductive health and rights among recently arrived migrants in Sweden: a cross-sectional survey
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Limitations in predicting reduced susceptibility to third generation cephalosporins in Escherichia coli based on whole genome sequence data

Heydecke, Anna; Yin, Hong; Tano, Eva; Sütterlin, Susanne

Part of PLOS ONE, 2023

• DOI for Limitations in predicting reduced susceptibility to third generation cephalosporins in Escherichia coli based on whole genome sequence data
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Management of influenza: updated Swedish guidelines for antiviral treatment

Westin, Johan; Andersson, Emmi; Bengner, Malin; Berggren, Anna et al.

Part of Infectious Diseases, p. 725-737, 2023

• DOI for Management of influenza: updated Swedish guidelines for antiviral treatment

Population Pharmacokinetic and Pharmacodynamic Analysis of Valganciclovir for Optimizing Preemptive Therapy of Cytomegalovirus Infections in Kidney Transplant Recipients

Cojutti, Pier Giorgio; Heffernan, Aaron J.; Tängdén, Thomas; Della Siega, Paola et al.

Part of Antimicrobial Agents and Chemotherapy, 2023

• DOI for Population Pharmacokinetic and Pharmacodynamic Analysis of Valganciclovir for Optimizing Preemptive Therapy of Cytomegalovirus Infections in Kidney Transplant Recipients

Predicting cytokine kinetics during sepsis; a modelling framework from a porcine sepsis model with live Escherichia coli

Bahnasawy, Salma M.; Skorup, Paul; Hanslin, Katja; Friberg, Lena et al.

Part of Cytokine, 2023

• DOI for Predicting cytokine kinetics during sepsis; a modelling framework from a porcine sepsis model with live Escherichia coli
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Prevalence, risk factors, treatment uptake and treatment outcome of hepatitis C virus in people who inject drugs at the needle and syringe program in Uppsala, Sweden

Kågström, Elsa; Lannergård, Anders; El Khosht, J.; Lörelius, P. et al.

Part of Harm Reduction Journal, 2023

• DOI for Prevalence, risk factors, treatment uptake and treatment outcome of hepatitis C virus in people who inject drugs at the needle and syringe program in Uppsala, Sweden
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